UNITED STATES   OMB APPROVAL
  SECURITIES AND EXCHANGE COMMISSION   OMB Number:    3235-0145
  Washington, D.C. 20549   Expires:     February 28, 2009
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  SCHEDULE 13D    

 

Under the Securities Exchange Act of 1934

 

(Amendment No. 3)*

 

Kala Pharmaceuticals, Inc.

(Name of Issuer)

 

Common Stock, par value $0.001 per share

(Title of Class of Securities)

 

483119103

(CUSIP Number)

 

RA Capital Management, L.P.

200 Berkeley Street, 18th Floor

Boston, MA 02116

Telephone: 617.778.2512

Attn: Peter Kolchinsky

(Name, Address and Telephone Number of Person Authorized to
Receive Notices and Communications)

 

October 25, 2021

(Date of Event Which Requires Filing of this Statement)

 

If the filing person has previously filed a statement on Schedule 13G to report the acquisition that is the subject of this Schedule 13D, and is filing this schedule because of §§240.13d-1(e), 240.13d-1(f) or 240.13d-1(g), check the following box. ¨

 

Note: Schedules filed in paper format shall include a signed original and five copies of the schedule, including all exhibits. See Rule 13d-7 for other parties to whom copies are to be sent.

 

* The remainder of this cover page shall be filled out for a reporting person’s initial filing on this form with respect to the subject class of securities, and for any subsequent amendment containing information which would alter disclosures provided in a prior cover page.

 

The information required on the remainder of this cover page shall not be deemed to be “filed” for the purpose of Section 18 of the Securities Exchange Act of 1934 (“Act”) or otherwise subject to the liabilities of that section of the Act but shall be subject to all other provisions of the Act (however, see the Notes).

 

 

 

 

 

CUSIP No.   483119103
 
  1

Names of Reporting Persons.

RA Capital Management, L.P.

 
  2 Check the Appropriate Box if a Member of a Group (See Instructions)
    (a)  ¨
    (b)  ¨
 
  3 SEC Use Only
 
  4 Source of Funds (See Instructions):
AF
 
  5 Check if disclosure of legal proceedings is required pursuant to Items 2(d) or 2(e):     
¨
 
  6 Citizenship or Place of Organization.       Delaware
 
Number of
Shares
Beneficially
Owned by
Each
Reporting
Person With
7 Sole Voting Power   0 shares
 
8 Shared Voting Power     10,961,533 shares
 
9 Sole Dispositive Power   0 shares
 
10 Shared Dispositive Power   10,961,533 shares
 
  11 Aggregate Amount Beneficially Owned by Each Reporting Person
10,961,533 shares
 
  12 Check if the Aggregate Amount in Row (11) Excludes Certain Shares (See Instructions)   ¨
 
  13 Percent of Class Represented by Amount in Row (11)
16.85%1
 
  14 Type of Reporting Person (See Instructions)
IA, PN
           

 

 

 

1 The reporting person is the beneficial owner of 10,961,533 shares of the Issuer’s Common Stock which constitute approximately 16.85% of the class outstanding. The percentage calculation assumes that there are currently 65,058,016 outstanding shares of Common Stock of the Issuer, based on the Issuer’s Form 10-Q as filed with the Securities and Exchange Commission (“SEC”) on August 5, 2021 and giving effect to 46,,920 vested stock options (right to buy) and 40,000 vested Restricted Share Units issued to Mr. Rajeev Shah for the benefit of RA Capital.

 

 

 

 

CUSIP No.   483119103
 
  1

Names of Reporting Persons.

Peter Kolchinsky

 
  2 Check the Appropriate Box if a Member of a Group (See Instructions)
    (a)  ¨
    (b)  ¨
 
  3 SEC Use Only
 
  4 Source of Funds (See Instructions):
AF
 
  5 Check if disclosure of legal proceedings is required pursuant to Items 2(d) or 2(e):     
¨
 
  6 Citizenship or Place of Organization.       United States
 
Number of
Shares
Beneficially
Owned by
Each
Reporting
Person With
7 Sole Voting Power   0 shares
 
8 Shared Voting Power   10,961,533 shares
 
9 Sole Dispositive Power   0 shares
 
10 Shared Dispositive Power   10,961,533 shares
 
  11 Aggregate Amount Beneficially Owned by Each Reporting Person
10,961,533 shares
 
  12 Check if the Aggregate Amount in Row (11) Excludes Certain Shares (See Instructions)   ¨
 
  13 Percent of Class Represented by Amount in Row (11)
16.85%2
 
  14 Type of Reporting Person (See Instructions)
HC, IN
           

 

 

 

2 The reporting person is the beneficial owner of 10,961,533 shares of the Issuer’s Common Stock which constitute approximately 16.85% of the class outstanding. The percentage calculation assumes that there are currently 65,058,016 outstanding shares of Common Stock of the Issuer, based on the Issuer’s Form 10-Q as filed with the Securities and Exchange Commission (“SEC”) on August 5, 2021 and giving effect to 46,,920 vested stock options (right to buy) and 40,000 vested Restricted Share Units issued to Mr. Rajeev Shah for the benefit of RA Capital.

 

 

 

 

CUSIP No.   483119103
 
  1

Names of Reporting Persons.

Rajeev Shah

 
  2 Check the Appropriate Box if a Member of a Group (See Instructions)
    (a)  ¨
    (b)  ¨
 
  3 SEC Use Only
 
  4 Source of Funds (See Instructions):
AF
 
  5 Check if disclosure of legal proceedings is required pursuant to Items 2(d) or 2(e):     
¨
 
  6 Citizenship or Place of Organization.       United States
 
Number of
Shares
Beneficially
Owned by
Each
Reporting
Person With
7 Sole Voting Power   0 shares
 
8 Shared Voting Power   10,961,533 shares
 
9 Sole Dispositive Power   0 shares
 
10 Shared Dispositive Power   10,961,533 shares
 
  11 Aggregate Amount Beneficially Owned by Each Reporting Person
10,961,533 shares
 
  12 Check if the Aggregate Amount in Row (11) Excludes Certain Shares (See Instructions)   ¨
 
  13 Percent of Class Represented by Amount in Row (11)
16.85%3
 
  14 Type of Reporting Person (See Instructions)
HC, IN
           

 

 

 

3 The reporting person is the beneficial owner of 10,961,533 shares of the Issuer’s Common Stock which constitute approximately 16.85% of the class outstanding. The percentage calculation assumes that there are currently 65,058,016 outstanding shares of Common Stock of the Issuer, based on the Issuer’s Form 10-Q as filed with the Securities and Exchange Commission (“SEC”) on August 5, 2021 and giving effect to 46,,920 vested stock options (right to buy) and 40,000 vested Restricted Share Units issued to Mr. Rajeev Shah for the benefit of RA Capital.

 

 

 

 

CUSIP No.   483119103
 
  1

Names of Reporting Persons.

RA Capital Healthcare Fund, L.P.

 
  2 Check the Appropriate Box if a Member of a Group (See Instructions)
    (a)  ¨
    (b)  ¨
 
  3 SEC Use Only
 
  4 Source of Funds (See Instructions):
WC
 
  5 Check if disclosure of legal proceedings is required pursuant to Items 2(d) or 2(e):     
¨
 
  6 Citizenship or Place of Organization.       United States
 
Number of
Shares
Beneficially
Owned by
Each
Reporting
Person With
7 Sole Voting Power   0 shares
 
8 Shared Voting Power   10,961,533 shares
 
9 Sole Dispositive Power   0 shares
 
10 Shared Dispositive Power   10,961,533 shares
 
  11 Aggregate Amount Beneficially Owned by Each Reporting Person
10,961,533 shares
 
  12 Check if the Aggregate Amount in Row (11) Excludes Certain Shares (See Instructions)   ¨
 
  13 Percent of Class Represented by Amount in Row (11)
16.85%4
 
  14 Type of Reporting Person (See Instructions)
PN
           

 

 

 

4 The reporting person is the beneficial owner of 10,961,533 shares of the Issuer’s Common Stock which constitute approximately 16.85% of the class outstanding. The percentage calculation assumes that there are currently 65,058,016 outstanding shares of Common Stock of the Issuer, based on the Issuer’s Form 10-Q as filed with the Securities and Exchange Commission (“SEC”) on August 5, 2021 and giving effect to 46,,920 vested stock options (right to buy) and 40,000 vested Restricted Share Units issued to Mr. Rajeev Shah for the benefit of RA Capital.

 

 

 

 

CUSIP No. 483119103

 

SCHEDULE 13D

 

Item 1.Security and Issuer

 

Item 1 of the Statement is hereby amended and supplemented as follows:

 

This Amendment No. 3 amends and supplements the statement on Schedule 13D originally filed with the Securities and Exchange Commission (the “SEC”) on February 14, 2018, as amended by Amendment No. 1 filed on October 5, 2018 and by Amendment No. 2 filed on March 13, 2020 (the “Statement”) by RA Capital Management, L.P., Dr. Kolchinsky, and Mr. Shah with respect to the common stock, par value $0.001 per share (the “Common Stock”), of Kala Pharmaceuticals, Inc., a Delaware corporation (the “Issuer”) and serves as the initial Schedule 13D for RA Capital Healthcare Fund, L.P. (the “Fund”). Unless otherwise defined herein, capitalized terms used in this Amendment No. 3 shall have the meanings ascribed to them in the Statement. Unless amended or supplemented below, the information in the Statement remains unchanged

 

Item 2.Identity and Background

 

Item 2 of the Statement is hereby amended and restated as follows:

 

(a) This Schedule 13D is being filed on behalf of RA Capital Management, L.P. (“ RA Capital”), the Fund, Peter Kolchinsky, and Rajeev Shah. RA Capital, Dr. Kolchinsky, Mr. Shah, and the Fund are collectively referred to herein as the “Reporting Persons.”

 

The Common Stock reported herein includes 10,961,533 shares held by the Fund. RA Capital Healthcare Fund GP, LLC is the general partner of the Fund. The general partner of RA Capital is RA Capital Management GP, LLC, of which Dr. Kolchinsky and Mr. Shah are the controlling persons. RA Capital serves as investment adviser for the Fund and may be deemed a beneficial owner, for purposes of Section 13(d) of the Securities Exchange Act of 1934 (the “Act”), of any securities of the Issuer held by the Fund.  The Fund has delegated to RA Capital the sole power to vote and the sole power to dispose of all securities held in the Fund’s portfolio, including the shares of the Issuer’s Common Stock reported herein.  Because the Fund has divested itself of voting and investment power over the reported securities they hold and may not revoke that delegation on less than 61 days’ notice, the Fund disclaims beneficial ownership of the securities they hold for purposes of Section 13(d) of the Act and therefore disclaim any obligation to report ownership of the reported securities under Section 13(d) of the Act. As managers of RA Capital, Dr. Kolchinsky and Mr. Shah may be deemed beneficial owners, for purposes of Section 13(d) of the Act, of any securities of the Issuer beneficially owned by RA Capital.  RA Capital, Dr. Kolchinsky, and Mr. Shah disclaim beneficial ownership of the securities reported in this Schedule 13D Statement (the “Statement”) other than for the purpose of determining their obligations under Section 13(d) of the Act, and the filing of the Statement shall not be deemed an admission that either RA Capital, Dr. Kolchinsky, or Mr. Shah is the beneficial owner of such securities for any other purpose.

 

(b) The address of the principal business office of each of the Reporting Persons is 200 Berkeley Street, 18th Floor, Boston, MA 02116.

 

(c) The Fund is a private investment vehicle. RA Capital provides investment management services to the Fund. The principal occupation of Dr. Kolchinsky and Mr. Shah is investment management.

 

(d) During the last five years, none of the Reporting Persons has been convicted in a criminal proceeding (excluding traffic violations or similar misdemeanors).

 

 

 

 

CUSIP No. 483119103

 

(e) During the last five years, none of the Reporting Persons has been a party to a civil proceeding of a judicial or administrative body of competent jurisdiction and as a result of such proceeding was or is subject to a judgment, decree of final order enjoining future violations of, or prohibiting or mandating activities subject to, federal or state securities laws or finding any violation with respect to such laws.

 

(f) See Item 6 of the cover pages.

 

Item 3.Source and Amount of Funds or Other Consideration 

 

Item 3 of the Statement is hereby amended and supplemented as follows:

 

Mr. Shah was issued 40,000 Restricted Share Units (“RSU”) pursuant to the Non-Employee Director Compensation Policy. These RSUs vested as to 100% of the shares due to an acceleration clause following Mr. Shah’s resignation from the Issuer’s Board of Directors effective on October 15, 2021. These RSUs were issued on June 25, 2020 and June 17, 2021 in 20,000 lots.

 

Mr. Shah was issued 46,920 Share Options (right to buy) pursuant to the Non-Employee Director Compensation Policy. These option vested as to 100% of the shares have all vested to date.

 

Item 4.Purpose of Transaction

 

Item 4 of the Statement is hereby amended and supplemented as follows:

 

The Reporting Persons acquired the Common Stock referred to in Item 3 for investment purposes and not with an intent, purpose or effect of changing control of the Issuer.

 

Item 5.Interest in Securities of the Issuer 

 

Item 5 of the Statement is hereby amended and supplemented as follows:

 

(a) and (b) See Items 7-11 of the cover pages and Item 2 above.

 

(c) The Reporting Persons’ have not effected any transactions in Common Stock during the sixty day period prior to the filing of this Schedule 13D.

 

(d) Not applicable.

 

(e) Not applicable.

 

 

 

 

CUSIP No. 483119103

 

Item 6.Contracts, Arrangements, Understandings or Relationships with Respect to Securities of the Issuer 

 

Item 6 of the Statement is hereby amended and supplemented as follows:

 

Equity awards

 

Mr. Rajeev Shah (“Mr. Shah”), a Managing Partner at RA Capital, was a member of the Board of Directors of the Issuer which relationship terminated effective October 15, 2021. From time to time, Mr. Shah received stock options or other awards of equity-based compensation pursuant to the Issuer’s compensation arrangements for non-employee directors. Pursuant to an agreement with RA Capital, Mr. Shah is obligated to transfer any securities issued under any such stock options or other awards, or the economic benefit thereof, to RA Capital.

 

Item 7.Material to Be Filed as Exhibits

 

Item 7 of the Statement is hereby amended and supplemented as follows:

 

Exhibit 1   Joint Filing Agreement by and among the Reporting Persons, dated as of October 28, 2021 (filed herewith)

 

 

 

 

CUSIP No. 483119103

 

SIGNATURE

 

After reasonable inquiry and to the best of my knowledge and belief, I certify that the information set forth in this statement is true, complete and correct.

 

Date: October 28, 2021  

 

RA CAPITAL MANAGEMENT, L.P.

 

By: /s/ Peter Kolchinsky  
  Name: Peter Kolchinsky  
  Title: Authorized Signatory  

 

PETER KOLCHINSKY

 

/s/ Peter Kolchinsky  
   
RAJEEV SHAH  
   
/s/ Rajeev Shah  

  

RA CAPITAL HEALTHCARE FUND, L.P.

 

By: RA Capital Healthcare Fund GP, LLC
Its: General Partner

 

By: /s/ Peter Kolchinsky  
Name: Peter Kolchinsky  
Title: Manager  

 

 

 

 

CUSIP No. 483119103

 

EXHIBIT 1

 

AGREEMENT

 

This Joint Filing Agreement, dated as of October 28, 2021, is by and among RA Capital Management, L.P., Peter Kolchinsky, Rajeev Shah, and RA Capital Healthcare Fund, L.P. (the foregoing are collectively referred to herein as the “Filers”).

 

Each of the Filers may be required to file with the United States Securities and Exchange Commission a statement on Schedule 13G and/or 13D with respect to Common Stock, par value $0.001 per share of Kala Pharmaceutics, Inc. beneficially owned by them from time to time.

 

Pursuant to and in accordance with Rule 13(d)(1)(k) promulgated under the Securities Exchange Act of 1934, as amended, the Filers hereby agree to file a single statement on Schedule 13G and/or 13D (and any amendments thereto) on behalf of each of such parties, and hereby further agree to file this Joint Filing Agreement as an exhibit to such statement, as required by such rule.

 

This Joint Filing Agreement may be terminated by any of the Filers upon one week’s prior written notice or such lesser period of notice as the Filers may mutually agree.

 

Executed and delivered as of the date first above written.

 

RA CAPITAL MANAGEMENT, L.P.

 

By: /s/ Peter Kolchinsky  
  Name: Peter Kolchinsky  
  Title: Authorized Signatory  

 

PETER KOLCHINSKY

 

/s/ Peter Kolchinsky  
   
RAJEEV SHAH  
   
/s/ Rajeev Shah  

  

RA CAPITAL HEALTHCARE FUND, L.P.

 

By: RA Capital Healthcare Fund GP, LLC
Its: General Partner

 

By: /s/ Peter Kolchinsky  
Name: Peter Kolchinsky  
Title: Manager